__ ______ _____
/\ \ / / _ \| __ \
/ \ \ / /| |_) | |__) |
/ /\ \ \/ / | _ <| ___/
/ ____ \ / | |_) | |
/_/ \_\/ |____/|_|
Using branch :
Version date : Mon, 7 Apr 2025 11:37:25 +0200
Commit : 99e3e6b5a2
MPI processes : 128
Solver type: fluid
Computation #1/1
Compilation info : mpiifort -g -O3 -fpp -traceback -fno-alias -ip -assume byterecl -convert big_endian -align -march=core-avx2 -fma -axCORE-AVX2 -I/softs/local_intel/phdf5/1.8.20/include -DHAS_PMETIS -I/softs/local_intel/parmetis/403_64/include -DPARMETIS4 -DMETIS5 -DHAS_PTSCOTCH -I/softs/local_intel/ptscotch/6.0.5a/include
Compilation wrapper info : ifort-I/softs/intel/oneapi/mpi/2021.10.0//include-I/softs/intel/oneapi/mpi/2021.10.0/include-L/softs/intel/oneapi/mpi/2021.10.0/lib/release-L/softs/intel/oneapi/mpi/2021.10.0/lib-Xlinker--enable-new-dtags-Xlinker-rpath-Xlinker/softs/intel/oneapi/mpi/2021.10.0/lib/release-Xlinker-rpath-Xlinker/softs/intel/oneapi/mpi/2021.10.0/lib-lmpifort-lmpi-ldl-lrt-lpthread
Compilation user : camus
Compilation date : 2025-06-18 18:00:59
Compilation MPI version : Intel\(R\)MPILibraryforLinux*OS,Version2021.10Build20230619\(id:c2e19c2f3e\)
AVBP version : 7.16.0
----> Reading run parameters : .//./run.params
----> Using NATURAL reordering
>>>>> WARNING
>>>>> Use of cached el2part disabled
----> command.dat file API is enabled
----> Using TTGC
with UNCLOSED boundary terms
----> Using colin_species viscosity model
>>>>> WARNING
>>>>> Temporals are not computed!
>>>>> WARNING
>>>>> Specifier 'transport = computed' is deprecated since version 7.14. Please use 'transport = simplified' instead (simplified transport model).
----> Reading mesh : .//../MESH/config5_uniform_true.mesh.h5
Meshfile signature: fd2a16d9e6abb6308ccb0c380607da34
----> Can not find el2part file el2part_128.h5
Generating new partitioning (128 subdomains)...
----> Decomposition library: pmetis
----> Building dual graph
>> generation took 0.450s
>> Partitioning took 0.570s
----> Initialize the solution writers (128 writers)
>>>>> WARNING
>>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.
Checking TFLES table parameters...
Local optimal thickening is applied with 5.00 cells in the flame front.
----> Reading boundary conditions in asciibound file : .//../MESH/config5_uniform_true.asciiBound.key
_______________________________________________________________________________________
| Boundary patches after reordering |
|______________________________________________________________________________________|
| Patch number Patch name Boundary condition |
| ------------ ---------- ------------------ |
| 1 plenum_back OUTLET_RELAX_P_3D |
| 2 plenum_left OUTLET_RELAX_P_3D |
| 3 plenum_top OUTLET_RELAX_P_3D |
| 4 plenum_right OUTLET_RELAX_P_3D |
| 5 plenum_bottom OUTLET_RELAX_P_3D |
| 6 plenum_fr WALL_NOSLIP_ADIAB |
| 7 chamber_bottom WALL_NOSLIP_ADIAB |
| 8 chamber_left WALL_NOSLIP_ADIAB |
| 9 chamber_top WALL_NOSLIP_ADIAB |
| 10 chamber_right WALL_NOSLIP_ADIAB |
| 11 chamber_fr WALL_NOSLIP_ADIAB |
| 12 grid11_fr WALL_NOSLIP_ADIAB |
| 13 grid11_ba WALL_NOSLIP_ADIAB |
| 14 grid12_fr WALL_NOSLIP_ADIAB |
| 15 grid12_ba WALL_NOSLIP_ADIAB |
| 16 grid13_fr WALL_NOSLIP_ADIAB |
| 17 grid13_ba WALL_NOSLIP_ADIAB |
| 18 grid14_fr WALL_NOSLIP_ADIAB |
| 19 grid14_ba WALL_NOSLIP_ADIAB |
| 20 grid15_fr WALL_NOSLIP_ADIAB |
| 21 grid15_ba WALL_NOSLIP_ADIAB |
| 22 obtsacle_fr WALL_NOSLIP_ADIAB |
| 23 obtsacle_ba WALL_NOSLIP_ADIAB |
|______________________________________________________________________________________|
______________________________________________________________
| Info on initial grid |
|_____________________________________________________________|
| number of dimensions : 3 |
| number of nodes : 3543424 |
| number of cells : 20083754 |
| - tetrahedra : 20083754 |
| number of cell per group : 100 |
| number of boundary nodes : 243230 |
| number of periodic nodes : 0 |
| number of axi-periodic nodes : 0 |
|_____________________________________________________________|
| After partitioning |
|_____________________________________________________________|
| number of nodes : 3866714 |
| extra nodes due to partitioning : 323290 [+ 9.12‰] |
|_____________________________________________________________|
______________________________________________________________
| Partitioning Quality |
|_____________________________________________________________|
| Maximum number of neighbors : 20.00 |
| Average number of neighbors : 10.70 |
| Maximum number of exchange nodes : 6945.00 |
| Average number of exchange nodes : 4930.22 |
|_____________________________________________________________|
----> Reading initial solution : .//../MESH/init.h5
----> Reading took 1.766s
______________________________________________________________
| Info on chemistry |
|_____________________________________________________________|
| Kinetic scheme : C3H8_F2 |
| |
| Chemical reaction #1 |
| Preexponential / fthick [SI] : 2.38433847E+09 |
| Activation temperature [K] : 2.08840191E+04 |
| |
| Chemical reaction #2 |
| Preexponential / fthick [SI] : 4.50000000E+07 |
| Activation temperature [K] : 1.00645875E+04 |
|_____________________________________________________________|
______________________________________________________________
| Info on initial solution |
|_____________________________________________________________|
| number of Navier-Stokes equations : 5 |
| number of species : 6 |
| number of reactions : 2 |
| number of tpf equations : 0 |
| number of fictive species : 0 |
| initial iteration : 93387 |
| initial time : 9.00005232E-03 |
|_____________________________________________________________|
----> Reading solutbound : .//../MESH/perso.solutBound.h5
- Using 6.X format
----> Reading took 0.033s
----> Initialising metrics
----> Total volume of the mesh [m3] : 1.35006148E+01
----> Smallest cell volume [m3] : 1.48598105E-12
----> Found cached wall distance computation. Checking: ./ywall.h5
> Signatures match
----> Reading cached wall distance computation: ./ywall.h5
----> Reading took 0.113s
----> Boundary MPIs: 117
----> End pre-processing.
________________________________________________________________________________________________________
----> Starts the temporal loop.
----> End computation.
________________________________________________________________________________________________________
____________________________________________________________________________________________
| 128 MPI tasks Elapsed real time [s] [s.cores] [h.cores] |
|___________________________________________________________________________________________|
| AVBP : 132.15 1.6915E+04 4.6986E+00 |
| Temporal loop : 124.32 1.5913E+04 4.4204E+00 |
| Per simulated second : 1.3777E+07 1.7635E+09 4.8985E+05 |
| Per iteration : 1.2432 1.5913E+02 |
|-------------------------------------------------------------------------------------------|
| RCT [s.mpi/node/it] : 4.49098812E-05 |
|___________________________________________________________________________________________|
----> Initial physical time : 9.00005232E-03
Initial iteration : 93387
Initial timestep : 9.02395769E-08
----> Final physical time : 9.00907635E-03
Final iteration : 93487
Final timestep : 9.02453013E-08
----> Simulated physical time : 9.02402706E-06
Simulated iterations : 100
________________________________________________________________________________________________________
TIMERS
________________________________________________________________________________________________________
Prints relevant timers and breaks down percentage regarding reference timers.
> The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
> The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
> Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
> References to the upper level is made to compute the contribution of one sub-level to its parent level.
> The times displayed are those of the master processor.
> For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
> A json file 'timers.json' containing all the data is also available in the temporal output directory.
----- 1st level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> [0] Total slave simulation : 1.3215E+02 | 100.00% [ 1.3214E+02 1.3215E+02 1.3215E+02 ]
----- 2nd level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> > [0.1] Pre temporal loop : 7.8113E+00 | 5.91% [ 7.8085E+00 7.8105E+00 7.8123E+00 ]
> > [0.2] Temporal loop : 1.2432E+02 | 94.08% [ 1.2432E+02 1.2432E+02 1.2432E+02 ]
> > [0.2a] Temporal loop without IO : 1.2432E+02 | 94.08% [ 1.2432E+02 1.2432E+02 1.2432E+02 ]
> > [0.3] Post temporal loop : 1.1263E-02 | 0.01% [ 1.0238E-02 1.2246E-02 1.3558E-02 ]
> > [0.4] Point to Point communications : 3.8332E+01 | 29.01% [ 3.4304E+01 3.8787E+01 5.3801E+01 ]
----- 3rd level timers
time [s] | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | upper level [%] [ ]
> > [0.1] Pre temporal loop : 7.8113E+00 | 5.91% [ 7.8085E+00 7.8105E+00 7.8123E+00 ]
> > > [0.1.1] Build online postprocessing objects : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > [0.2] Temporal loop : 1.2432E+02 | 94.08% [ 1.2432E+02 1.2432E+02 1.2432E+02 ]
> > > [0.2.1] Computation : 1.2428E+02 | 94.05% | 99.97% [ 1.2257E+02 1.2406E+02 1.2431E+02 ]
> > > [0.2.2] Temporal post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.3] Instantaneous solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.4] Average solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.5] Online post-processing compute and storage : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----- 4th level timers: focus on Computation level (rungekutta_timer)
time [s] | relative to | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | computation [%]| upper level [%][ ]
> > > [0.2.1] Computation : 1.2428E+02 | 94.05% | 100.00% [ 1.2257E+02 1.2406E+02 1.2431E+02 ]
> > > > [0.2.1.1] Convective scheme : 1.5406E+01 | 11.66% | 12.40% | 12.40% [ 1.2970E+01 1.6006E+01 2.3299E+01 ]
> > > > [0.2.1.2] Diffusion operator : 1.9973E+01 | 15.11% | 16.07% | 16.07% [ 1.7185E+01 2.0717E+01 2.1617E+01 ]
> > > > [0.2.1.4] Time-step calculation : 2.9114E+00 | 2.20% | 2.34% | 2.34% [ 1.8399E+00 2.2964E+00 3.0512E+00 ]
> > > > [0.2.1.5] Transport calculation : 3.0664E-01 | 0.23% | 0.25% | 0.25% [ 2.5096E-01 4.8063E-01 6.8397E-01 ]
> > > > [0.2.1.6] Thermo calculation : 1.7920E+00 | 1.36% | 1.44% | 1.44% [ 1.2352E+00 1.7259E+00 2.0011E+00 ]
> > > > [0.2.1.7] Gradient calculation : 1.5495E+01 | 11.73% | 12.47% | 12.47% [ 1.0506E+01 1.7910E+01 2.5376E+01 ]
> > > > [0.2.1.8] Boundary : 7.4652E+00 | 5.65% | 6.01% | 6.01% [ 9.8563E-01 4.1503E+00 7.6169E+00 ]
> > > > [0.2.1.9] Turbulent viscosity model : 3.8571E+00 | 2.92% | 3.10% | 3.10% [ 2.6884E+00 3.1953E+00 5.3459E+00 ]
> > > > [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) : 2.4966E+01 | 18.89% | 20.09% | 20.09% [ 1.6720E+01 2.2814E+01 2.9747E+01 ]
> > > > > [0.2.1.10.1] Chemical source terms calculation : 1.0158E+01 | 7.69% | 8.17% | 40.69% [ 6.9671E+00 9.4744E+00 1.1955E+01 ]
> > > > > [0.2.1.10.2] TFLES model calculation : 1.0471E+01 | 7.92% | 8.42% | 41.94% [ 6.6508E+00 9.5725E+00 1.2781E+01 ]
> > > > > [0.2.1.10.3] Efficiency function calculation : 4.3377E+00 | 3.28% | 3.49% | 17.37% [ 3.1020E+00 3.7669E+00 5.0107E+00 ]
> > > > > [0.2.1.10.4] Efficiency I0 function calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > [0.2.1.11] Artificial viscosity : 7.2821E+00 | 5.51% | 5.86% | 5.86% [ 6.2586E+00 7.5643E+00 8.2526E+00 ]
> > > > [0.2.1.17] Source terms : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----> End of AVBP session
----> Found 4 warning messages for this computation, check your output file!
***** Memory usage (system): Max: 409.242 MB (rank:73) Min: 336.961 MB (rank:54) Ave: 366.401 MB Std: 14.391 MB
***** Maximum memory (mod_alloc) : 103349020 B ( 9.856131E+01 MB)
[MAQAO] Info: 127/128 lprof instances finished
[MAQAO] Info: Detected stop signals that could make lprof alter execution. In case of issues, rerun with lprof-params="-verbose" for more information.
Your experiment path is /scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m128_ov1_rome/tools/lprof_npsu_run_0
To display your profiling results:
##############################################################################################################################################################
# LEVEL | REPORT | COMMAND #
##############################################################################################################################################################
# Functions | Cluster-wide | maqao lprof -df xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m128_ov1_rome/tools/lprof_npsu_run_0 #
# Functions | Per-node | maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m128_ov1_rome/tools/lprof_npsu_run_0 #
# Functions | Per-process | maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m128_ov1_rome/tools/lprof_npsu_run_0 #
# Functions | Per-thread | maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m128_ov1_rome/tools/lprof_npsu_run_0 #
# Loops | Cluster-wide | maqao lprof -dl xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m128_ov1_rome/tools/lprof_npsu_run_0 #
# Loops | Per-node | maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m128_ov1_rome/tools/lprof_npsu_run_0 #
# Loops | Per-process | maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m128_ov1_rome/tools/lprof_npsu_run_0 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m128_ov1_rome/tools/lprof_npsu_run_0 #
##############################################################################################################################################################
